Biblio

Bryant, Drew H, M Moll, Brian Y Chen, Viacheslav Y Fofanov, and Lydia E Kavraki. 2010. “Analysis Of Substructural Variation In Families Of Enzymatic Proteins With Applications To Protein Function Prediction”. Bmc Bioinformatics 11. Bmc Bioinformatics. doi:10.1186/1471-2105-11-242.

Kristensen, David M, RM Ward, Andreas M Lisewski, Serkan Erdin, Brian Y Chen, Viacheslav Y Fofanov, Marek Kimmel, Lydia E Kavraki, and Olivier Lichtarge. 2008. “Prediction Of Enzyme Function Based On 3D Templates Of Evolutionarily Important Amino Acids.”. Bmc Bioinformatics 9. Bmc Bioinformatics: 17. doi:10.1186/1471-2105-9-17.

Fofanov, Viacheslav Y, Brian Y Chen, Drew H Bryant, Mark Moll, Olivier Lichtarge, Lydia E Kavraki, and Marek Kimmel. 2008. “A Statistical Model To Correct Systematic Bias Introduced By Algorithmic Thresholds In Protein Structural Comparison Algorithms”. 2008 Ieee International Conference On Bioinformatics And Biomeidcine Workshops. 2008 Ieee International Conference On Bioinformatics And Biomeidcine Workshops: 1–8. doi:10.1109/BIBMW.2008.4686202.

Chen, Brian Y, Drew H Bryant, Viacheslav Y Fofanov, David M Kristensen, Amanda E Cruess, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2007. “Cavity Scaling: Automated Refinement Of Cavity-Aware Motifs In Protein Function Prediction.”. J Bioinform Comput Biol 5. J Bioinform Comput Biol: 353–82.

Chen, Brian Y, Drew H Bryant, Amanda E Cruess, JH Bylund, Viacheslav Y Fofanov, David M Kristensen, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2007. “Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity For Function Prediction.”. In Computational Systems Bioinformatics Conference (Csb2007), 6:343–55. Computational Systems Bioinformatics Conference (Csb2007).

Chen, Brian Y, Viacheslav Y Fofanov, Drew H Bryant, Brad D Dodson, David M Kristensen, Andreas M Lisewski, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2007. “The Mash Pipeline For Protein Function Prediction And An Algorithm For The Geometric Refinement Of 3D Motifs.”. J Comp Biol 14. J Comp Biol: 791–816. doi:10.1089/cmb.2007.R017.

Chen, Brian Y, Drew H Bryant, Viacheslav Y Fofanov, David M Kristensen, Amanda E Cruess, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2006. “Cavity-Aware Motifs Reduce False Positives In Protein Function Prediction.”. In Proceedings Of The 2006 Ieee Computational Systems Bioinformatics Conference (Csb 2006), 311–23. Proceedings Of The 2006 Ieee Computational Systems Bioinformatics Conference (Csb 2006).

Chen, Brian Y, Viacheslav Y Fofanov, Drew H Bryant, Brad D Dodson, David M Kristensen, Andreas M Lisewski, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2006. “Geometric Sieving : Automated Distributed Optimization Of 3D Motifs For Protein Function Prediction”. In Proceedings Of The Tenth Annual International Conference On Computational Molecular Biology (Recomb 2006), 500–515. Proceedings Of The Tenth Annual International Conference On Computational Molecular Biology (Recomb 2006).

Kristensen, David M, Brian Y Chen, Viacheslav Fofanov, Rober M Ward, Andreas M Lisewski, Marek Kimmel, Lydia E Kavraki, and Oliver Lichtarge. 2006. “Recurrent Use Of Evolutionary Importance For Functional Annotation Of Proteins Based On Local Structural Similarity”. Protein Sci 15. Protein Sci: 1530–1536.

Chen, Brian Y, Viacheslav Y Fofanov, David M Kristensen, Marek Kimmel, Olivier Lichtarge, and Lydia E Kavraki. 2005. “Algorithms For Structural Comparison And Statistical Analysis Of 3D Protein Motifs.”. In Pacific Symposium On Biocomputing., 345:334–45. Pacific Symposium On Biocomputing.

Plaku, Erion, Kostas E Bekris, Brian Y Chen, Andrew M Ladd, and Lydia E Kavraki. 2005. “Sampling-Based Roadmap Of Trees For Parallel Motion Planning”. Ieee Transactions On Robotics 21. Ieee Transactions On Robotics: 597–608. doi:10.1109/TRO.2005.847599.

Bekris, Kostas E, Brian Y Chen, Andrew M Ladd, Erion Plaku, and Lydia E Kavraki. 2003. “Multiple Query Probabilistic Roadmap Planning Using Single Query Planning Primitives”. In Proceedings 2003 Ieee/Rsj International Conference On Intelligent Robots And Systems (Iros 2003), 01:656–661. Proceedings 2003 Ieee/Rsj International Conference On Intelligent Robots And Systems (Iros 2003). Ieee. doi:10.1109/IROS.2003.1250704.

Akinc, Mert, Kostas E Bekris, Brian Y Chen, Andrew M Ladd, Erio Plaku, and Lydia E Kavraki. 2003. “Probabilistic Roadmap Of Trees For Parallel Computation Of Multiple Query Roadmaps”. In Eleventh International Symposium Of Robotics Research (Isrr), 80–89. Eleventh International Symposium Of Robotics Research (Isrr).